Platform

Imaging at the scale of mechanism.

Magnephy resolves drug, target, and tissue structure at 30 nm in 3D, in intact tissue. Reproducible, AI-quantified readouts of targeting, biodistribution, and tissue response, ready for preclinical and translational decisions.

The bottleneck

The real bottleneck is the sample, not the microscope.

In tissue imaging, the resolution you achieve is set by the sample. Optical scattering, labelling efficiency, and sectioning artefacts cap the value of every downstream technique. Magnephy's tissue clearing and labelling protocols, refined over more than a decade removes that cap, so biology can be measured with nanoscale precision in intact tissue.

Workflow

One workflow.Three steps.One quantitative readout.

Optically cleared kidney biopsy under multi-colour fluorescence. Whole-tissue overview, Magnephy in-house imaging.
01 · Tissue clearing

Tissue clearing

Optical clearing turns intact biopsies and whole-tissue samples transparent without sectioning. Refined over a decade at SciLifeLab and KTH Royal Institute of Technology; published in three Kidney International papers (2016, 2021, 2023).

STED super-resolution detail of a glomerulus, showing the slit-diaphragm network. Magnephy in-house imaging.
02 · Super-resolution imaging

Super-resolution imaging

STED super-resolution microscopy resolves structure at 30 nm in 3D. The platform reads inside individual cells: organelle-level biodistribution, drug-target colocalisation and subcellular biomarker counts.

Raw super-resolution micrograph of kidney foot processes fading into its AI segmentation, each structure individually colour-labelled. Magnephy in-house.
03 · AI segmentation

AI segmentation

AI-driven segmentation turns volumetric image stacks into reproducible quantitative readouts: per-cell metrics, per-region distributions and per-cohort comparisons.

Capabilities

What you actually get back.

Drug-target colocalisation

Where the therapeutic sits relative to its target, at 30 nm in 3D. Direct, not inferred. Quantified across whole 3D volumes.

Subcellular biodistribution

Where the therapeutics ends up inside individual cells. Organelle-level distribution in real tissue, not approximated by proximity.

Quantitative pathology

Tissue structure, disease state and treatment response, AI-quantified to replace qualitative scoring. Specialized assays of podocyte and glomerular pathology for nephrology programs are available.

Multiplex biomarker readouts

Multi-channel marker counts and spatial distributions across whole tissue volumes. Reproducible across samples and timepoints, comparable across cohorts.

Comparison

How the platform differs from standard tissue imaging.

Conventional methods trade resolution against molecular detail against 3D context. Magnephy combines tissue clearing, super-resolution imaging, and AI segmentation into a single workflow that achieves all three at once, in intact tissue.

Confocal IF · EM · IHC Magnephy
2D sections 3D whole tissue volumes
Resolution OR molecular detail OR throughput All three in one workflow
Drug-target colocalisation inferred at >300 nm Drug-target colocalisation resolved at 30 nm
Manually-scored, qualitative AI-segmented, quantitative, reproducible
Each technique a separate run Single integrated platform

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